All functions

boundaries_data

A list of northern and southern borders for U.S. West Coast areas

calc_index_areas()

Calculate area-specific indices between each set of boundaries

diagnose()

Retrieve model estimates and plot diagnostics

filter_boundaries()

Eliminate boundaries that do not have any data in them or are duplicates

filter_grid()

Filter a grid created with lookup_grid()

format_data()

Format data by standardizing column names and units

format_family()

Format the name of a distribution

format_strata()

Format the strata for a species distribution model

lookup_grid()

Lookup the prediction grid

map_base()

Plot a map to use as the base for other maps

map_density()

Plot the predicted biomass density by year.

map_effects()

Plot the fixed and spatial effects from the fit predictions

map_residuals()

Plot the data from a model fit by sdmTMB::sdmTMB()

map_year_re()

Plot the annual random effects predictions by year for the fit model

plot_indices()

Plot the indices

plot_map()

Map using ggplot2::ggplot()

plot_pars_fixed()

Plot the annual parameter estimates from the fit model

plot_qq()

Quantile-Quantile plot of an sdmTMB::sdmTMB() object

run()

A deprecated function, use run_sdmtmb()

run_sdmtmb()

Run sdmTMB::sdmTMB()

sanity_data()

Creates a data frame of information from sdmTMB::sanity()

write_hessian()

Write a file with a single logical regarding the hessian status