Package index
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CreateData()deprecated - Deprecated function renamed to load_data()
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CreateSpecs()deprecated - Deprecated function renamed to load_specs()
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DoApplyAgeError() - Run the ageing error optimization routine
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PlotOutputFn() - Plot output
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ProcessResults() - Process results of the ageing error estimation
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RunFn() - Run ageing error model
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SimulatorFn() - Simulate double reading data
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StepwiseFn() - Step-wise model selection
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ageing_comparison() - Plot comparison of double age readings
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cMx() - Make a column matrix
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determine_n_sets() - Determine the number of data sets in a data file
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estgrowth.vb() - Calculate von Bertanlaffy Growth Parameters from Lengths and Ages
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fit() - Fit an ageing error model using TMB
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load_data() - Load the formatted ageing error data
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load_specs() - Read the ageing error specifications
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minimizer() - Minimize the negative log likelihood
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plot_output() - Plot output
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rMx() - Make a row matrix
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run() - Run ageing error routine
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tally_repeats() - Tally repeated age reading combinations in a new count column
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write_data_file() - Write a data file for the AgeingError package
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write_files() - Write the input files (data and specifications) for the AgeingError package
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write_specs_file() - Write a specifications file for the AgeingError package