All functions

add_figure()

Read, render, and use a figure from a specific directory

add_fullstop()

Add a full stop to the end of a sentence

authors

A data frame of authors and their affiliations

check_bib()

Perform checks on a .bib file

check_yaml()

Check to make sure index.Rmd contains all current YAML options

compile()

Compile the stock assessment document(s) for a given species

compile_changebookname()

Change bookname in the _bookdown.yml file

compile_internal()

A non-vectorized version of compile

create_tempdir_for_latex()

Creates a temporary directory for compiling the latex file with latex commands for a csasdown type

doit()

Internal Code to Build, Load, and Render the sa Template

draft()

Initiate a sa4ss draft document, complete with directories and files

es_table_tex()

Create tex file from executive summary tables

get_affiliation()

Get Affiliations for Authors

get_plotinfo()

The following script will look for the CSV file plotInfoTable created by r4ss in order to automate some of the plots. The plotInfoTable file is added to the folder each time SS_plots is run (including when you update any of the plots) The most recent version of plotInfoTable with the complete list of plots will be used.

get_templatenames()

Get Available .Rmd Template Files For A Given Section

read_child()

Read, render, and use a child document

read_model()

Create an RData object specific for sa4ss

report_ref_label()

Format a figure or table label for use in a report

sa4ss

sa4ss: Generate stock assessment pdfs from Stock Synthesis

session_test()

Test your installation of sa4ss

table_format()

Custom table for sa4ss

techreport_pdf()

Technical report output formatting

write_authors()

Compile Authors Names in YAML Form

write_bibliography()

Write yaml header for bibliography to its own .Rmd file

write_summary()

Write Summary Files

write_title()

Compile Title in YAML format