5  Other useful tidbits

5.1 Notes on shared software

5.1.1 Using GitHub

Git is a version control system that can be used to synchronize files between the web and local directories. GitHub is a user-friendly website which hosts files and depends on Git.

5.1.2 Shared code locations

Most of the R packages and code used in NWFSC assessments are listed in the README at (https://github.com/pfmc-assessments). Other sources not included in this github organization include Stock Synthesis and associated packages including {r4ss} and {ss3diags} (not yet used for PFMC assessments).

In addition, NMFS OpenSci has a number of NMFS templates for websites, quarto, Rmd docs, and presentations