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Plot frequency data as bubble plots

plot_comps.Rd

Plot frequency data as bubble plots

Usage

plot_comps(
  data,
  dir = NULL,
  add_save_name = NULL,
  plot = 1:2,
  add_0_ylim = TRUE,
  width = 10,
  height = 7
)

Arguments

data

Data file object created by get_expanded_comps() or get_raw_comps().

dir

Directory where output will be saved. The directory where the file should be saved. If dir = NULL no output will be saved.

add_save_name

Option to add text to a saved figure name. This option can be useful if creating plots across multiple species and saving them into a single folder. The default is NULL. Note that the data type, i.e., age or length, and sex type are already included in the saved name so no need to add those here.

plot

A vector of integers to specify which plots you would like. The default is to print or save both figures, i.e., plot = 1:2. Integers correspond to the following figures:

  1. bubble plot of length-/age-composition data by year and sex and

  2. distribution by year of length-/age-compositions data similar to the r4ss figure.

add_0_ylim

A logical, i.e., TRUE/FALSE, argument that specifies if the y axis should start at 0. If FALSE, the y axis will start at the minimum bin size used in data. The default is TRUE. This currently only pertains to plot 1, not plot 2.

width, height

Numeric values for the figure width and height in inches. The defaults are 10 by 7 inches.

Author

Chantel Wetzel

Examples

if (FALSE) { # \dontrun{
plot_comps(data = LFs)
} # }