Changelog
nwfscSurvey 2.8.0
- Add replacement functions for a number of existing functions with standardized naming structure and add soft deprecation warning to the older functions. The new functions are:
create_strata()to replacecreatStrataDF.fn(),get_spp_list()to replaceGetSppDefault.fn(),get_strata_areas()to replacecreateStrataDF.fn(),get_strata_areas_default()to replaceGetStrata.fn(),get_survey_names_abb()to replaceGetSurveyAbb.fn(),get_survey_names_long()to replacecreateMatrix(),plot_cpue_map()to replacePlotMap.fn(),plot_sex_ratio()to replacePlotSexRatio.fn(),plot_sex_ratio_strata()to replacePlotSexRatioStrata.fn(), andstrata_factors()to replaceStrataAreas.fn(). - Hard deprecate functions that should no longer be used:
ReadInLengths(),ReadInAges(), andFormat.AKSlope.fn(). - Eliminate the hardwired functionality of all plots being saved to
file.path(dir, "plots")and move to save files to the user specifieddir. - Eliminate the hardwired functionality of all ss3 output being saved to
file.path(dir, printfolder)with the default ofprintfolder = forss3and move to save files to the user specifieddir. - Make
survey = NWFSC.Combothe default argument for allpull_functions. - Move to
@inheritParamsfrom@template - Removes 17 deprecated functions (and their corresponding man pages) including
Biomass.fn,PullCatch.fn,PullBio.fn,SurveyLFs.fn,SurveyAFs.fn,GetN.fn, and others, along with cleaning up the NAMESPACE of their exports and unused imports. - Converts
stop()and warning() calls tocli::cli_abort()andcli::cli_alert_warning().