Run all the analysis together

Run all the analysis together

run(
  species_name,
  data_grouping,
  len_bins = seq(10, 60, 2),
  age_bins = 1:30,
  catch_data,
  biological_data,
  em_catch_data = NULL,
  save_loc = NULL,
  n_boot = 10000
)

Arguments

species_name

Species that you want composition data for. Should match the species names in the WCGOP data.

data_grouping

A list of the groupings to apply to the data. The list should formatted as: list(gear_groups, gear_names, fleet_groups, fleet_names, fleet_colname).

len_bins

Length composition bins (example: seq(20, 90, 2)).

age_bins

Age composition bins (example: 1:50).

catch_data

A data frame of WCGOP catch data that includes all species. This data frame will be used to check confidentiality.

biological_data

A data frame of WCGOP biological data that includes all species.

em_catch_data

A data frame of WCGOP EM catch data that includes all species.

save_loc

Directory location to save files.

n_boot

Number of bootstraps to run.

Author

Chantel Wetzel