Create plots to be included in presentations and documents that summarize a likelihood profile.
plot_profile(mydir, rep, para, profilesummary)Directory where model files are located.
There is no default entry for mydir.
An example of user input could be
mydir = file.path("C:/my_models", "base_model").
A list of model output as returned by r4ss::SS_output().
A character string specifying the SS3 parameter name that the
profile pertains to. The parameter name should match the name in the
control.ss_new file from SS3.
The name will be cleaned up for plotting purposes internally within the function.
For example, SR_BH_steep becomes "Steepness (h)".
Output from r4ss::SSsummarize().
Ensure that the results are ordered according to the parameter of interest.
Otherwise, the profile plots will not be smooth and lines will zig-zag back and forth.
profile_wrapper and rerun_profile_vals call plot_profile.