Get model values across retrospective runs

get_retro_quants(mydir, model_settings, output)

Arguments

mydir: Directory where model files are located. There is no default entry for mydir. An example of user input could be mydir = file.path("C:/my_models", "base_model").
model_settings: A list of all model settings. Typically, created using get_settings but users can create their own list, as long as it has all of the necessary components for the function at hand.
output: List of model output created by run_retro().

Nothing is explicitly returned from get_retro_quants(). The following objects are saved to the disk.

mohnsrho.csv with the following columns:
- type: the type of Mohn's rho
  - Mohn (1999),
  - Woods Hole Mohn's rho (Legault 2009) used by the Northeast Fisheries Science Center (NEFSC), and
  - Hurtado-Ferro et al. (2015) used by the Alaska Fisheries Science Center (AFSC)
- Quantity: the stock assessment quantity of interest
- values: the Mohn's rho values
apply(utils::read.csv(file.path("..", paste0(mod_loc, "_retro"), "retrofigures4doc.csv")), 1, function(x) do.call(sa4ss::add_figure, as.list(x)))
mohnsrho.tex for use with sa4ss::read_child() inside of an environment with results = "asis" to include a table of Mohn's rho values in a document.

sa4ss::read_child(file.path(paste0(params[["model"]], "_retro"), "mohnsrho.tex"))

Chantel Wetzel