Generate likelihood profiles To be called from the run_diagnostics function after creating the model settings using the get_settings function.

Generate likelihood profiles To be called from the run_diagnostics function after creating the model settings using the get_settings function.

get_param_values(mydir, para = NULL, vec, summary)

Arguments

mydir

Directory where model files are located. There is no default entry for mydir. An example of user input could be mydir = file.path("C:/my_models", "base_model").

para

A character string specifying the SS3 parameter name that the profile pertains to. The parameter name should match the name in the control.ss_new file from SS3.

vec

Vector of parameter values or retrospective runs the summary object contains

summary

List created by the r4ss::SSsummarize() function

Author

Chantel Wetzel & Kelli Johnson