R/compare_model_gemm_catch.R
compare_model_gemm_catch.RdCheck model estimated total catch to the GEMM estimates. This function should only be used to compare estimates for coastwide models.
compare_model_gemm_catch(
replist,
common_name,
gemm_data = NULL,
dir = NULL,
add_name = NULL,
verbose = TRUE
)List of model objects created by r4ss::SS_output().
Common name of the species in the GEMM database.
A data frame of GEMM data from nwfscSurvey::pull_gemm().
If this argument is left blank, the function will pull the GEMM data
and evaluate mortality on a coastwide basis. However, if your model
is not coastwide and the GEMM data can be split out to match the model
area (e.g., assessment split north and south of 40 10 N. latitude) this
filtered data frame can be passed to the function via this argument and
the total mortality comparisons will be done relative to that data object.
The default value is NULL.
Directory to save figure. If no directory is provided the
figure is not saved. If a dir is specified a figure of the model
estimated total mortality compared to the GEMM total mortality, a
figure of total mortality across all years for the model, a rda of
all model years landed and catch estimates by fleet, and a rda of the
model estimated catch compared to the GEMM from 2003+. Default is NULL.
String that can be added to the saved figure names.
A logical that specifies if you want to print messages and
warnings to the console. The default is TRUE.